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Publications



In press  BMC Genomics
Biomarker discovery across annotated and unannotated microarray datasets using semi-supervised learning

October 2008  American College of Gastroenterology
  73rd Annual Scientific Meeting
Novel Genomic Biomarkers That Differentiate Between Inflammatory Bowel Disease And Normal Patients Using Peripheral Blood Specimens (poster)

October 2008  American College of Gastroenterology
  73rd Annual Scientific Meeting
Shared Molecular Pathways In Inflammatory Bowel Disease And Irritable Bowel Syndrome Suggested By Genomic Biomarkers (poster)

December 2007  San Antonio Breast Cancer Symposium
Cytogenetic Heterogeneity within Breast Tumor Specimens is Revealed by the eXagenBC Test (PDF)

October 2007  College of American Pathologists Annual Meeting
  USLABS Breakfast Workshop
Genomic Markers that Predict Distant Recurrence Risk via FISH Assays in Women with Early Stage Breast Carcinoma

June 2007  American Society of Clinical Oncology
  Journal of Clinical Oncology 25(18S):566S, 2007
Validation of genomic markers that predict distant recurrence risk via FISH assays in women with early stage breast carcinoma (Link)

May 2007  Journal of Molecular Diagnostics 9(3):327-336, 2007
Amplification Patterns of Three Genomic Regions Predict Distant Recurrence in Breast Carcinoma (Link)

December 2006  San Antonio Breast Cancer Symposium
Invasive ductal and invasive lobular carcinoma show a similar amplification profile of chromosomal markers prognostic for breast carcinoma recurrence (PDF)

October 2006  IBC Life Sciences Biomarkers Conference
Predicting Outcome in Women with Breast Cancer with Genomic Markers Sets

May 2006  Digestive Diseases Week
  American Association for the Study of Liver Diseases
  Gastroenterology 130(4):A782, 2006.
Highly accurate pre-treatment prediction of early viral response to combined peg-IFN/Ribavirin therapy in HCV-infected patients by a novel method of gene expression analysis: a preliminary study (PDF)

March 2006  Tumor Markers for Personalized Medicine: the New Frontier
HER2 compared with novel 3-gene marker sets for risk prediction of distant recurrence of breast carcinoma

November 2005  Archives of Pathology & Laboratory Medicine
The Unmet Clinical Need for New Molecular Genetic Markers in the Prognosis and Therapeutic Management of Breast Cancer (PDF)

September 2005  Genetic Engineering News
Drug Discovery: Novel Tests Based on Genomic Markers (PDF)
Novel Tests Based on Genomic Markers, Assay Tutorial: Improving the Clinical Utility of Testing for Breast Cancer Recurrence (Link)

September 2005  Pharmaceutical Executive
Biomarkers Come of Age (PDF)

June 2005  Genetic and Evolutionary Computation Conference
Multi-objective optimization in the concurrent mining of disparate genomic datasets

February 2005  United States and Canadian Academy of Pathology Annual Meeting
Prediction of Lymph Node Status Utilizing Selective Genomic Fluorescence In Situ Hybridization Markers in Invasive Breast Carcinoma (poster)

December 2004  San Antonio Breast Cancer Symposium
Discovery of Multiplex Genomic Markers for Predicting Breast Cancer Recurrence (PDF)
Validation of Multiplex Genomic Markers for Predicting Breast Cancer Recurrence in a FISH-Assay Format (PDF)

November 2003  American Society of Human Genetics Annual Meeting
Integration of CGH data and microarray gene expression data aids in the discovery of DNA-based diagnostic tumor markers (poster)

Spring 2002  Annual Spring Bioinformatics Workshop 2002
  National Center for Genome Resources
Biomarker Discovery: Clinical and Research Applications (invited talk)

March 2002  Inaugural Genomics Symposium, University of New Mexico
Magellan Biomarker Discovery in Microarray Data: Analysis of the MIT Leukemia and Rosetta Breast Cancer Datasets (poster)